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ISSN: 2333-9721
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BioData Mining

ISSN Print: 1756-0381

ISSN Online:

主页: http://www.biodatamining.org

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Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration

Rex T Nelson, Shulamit Avraham, Randy C Shoemaker, Gregory D May, Doreen Ware, Damian DG Gessler

Large scale analysis of positional effects of single-base mismatches on microarray gene expression data

Fenghai Duan, Mark A Pauley, Eliot R Spindel, Li Zhang, Robert B Norgren

A particle swarm optimization-based algorithm for finding gapped motifs

Chengwei Lei, Jianhua Ruan

SICTIN: Rapid footprinting of massively parallel sequencing data

Stefan Enroth, Robin Andersson, Claes Wadelius, Jan Komorowski

GeneWaltz--A new method for reducing the false positives of gene finding

Kazuharu Misawa, Reiko F Kikuno

ATHENA: A knowledge-based hybrid backpropagation-grammatical evolution neural network algorithm for discovering epistasis among quantitative trait Loci

Stephen D Turner, Scott M Dudek, Marylyn D Ritchie

3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach

Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini

LD-Spline: Mapping SNPs on genotyping platforms to genomic regions using patterns of linkage disequilibrium

William S Bush, Guanhua Chen, Eric S Torstenson, Marylyn D Ritchie

Spatially Uniform ReliefF (SURF) for computationally-efficient filtering of gene-gene interactions

Casey S Greene, Nadia M Penrod, Jeff Kiralis, Jason H Moore

Extraction of pure components from overlapped signals in gas chromatography-mass spectrometry (GC-MS)

Vladimir A Liki？

Database mining for selection of SNP markers useful in admixture mapping

Tesfaye M Baye, Hemant K Tiwari, David B Allison, Rodney C Go

Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms

Eric Arehart, Scott Gleim, Bill White, John Hwa, Jason H Moore

Partitioning clustering algorithms for protein sequence data sets

Sondes Fayech, Nadia Essoussi, Mohamed Limam

A biclustering algorithm based on a Bicluster Enumeration Tree: application to DNA microarray data

Wassim Ayadi, Mourad Elloumi, Jin-Kao Hao

Statistical quality assessment and outlier detection for liquid chromatography-mass spectrometry experiments

Ole Schulz-Trieglaff, Egidijus Machtejevas, Knut Reinert, Hartmut Schlüter, Joachim Thiemann, Klaus Unger

A survey of visualization tools for biological network analysis

Georgios A Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes

Antonio Reverter, Aaron Ingham, Brian P Dalrymple

Search extension transforms Wiki into a relational system: A case for flavonoid metabolite database

Masanori Arita, Kazuhiro Suwa

Clustering-based approaches to SAGE data mining

Haiying Wang, Huiru Zheng, Francisco Azuaje

Uncovering mechanisms of transcriptional regulations by systematic mining of cis regulatory elements with gene expression profiles

Qicheng Ma, Gung-Wei Chirn, Joseph D Szustakowski, Adel Bakhtiarova, Penelope A Kosinski, Daniel Kemp, Nanguneri Nirmala

A review of estimation of distribution algorithms in bioinformatics

Rubén Arma？anzas, I？aki Inza, Roberto Santana, Yvan Saeys, Jose Flores, Jose Lozano, Yves Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larra？aga

Neural networks for genetic epidemiology: past, present, and future

Alison A Motsinger-Reif, Marylyn D Ritchie

Multivariate profiling of neurodegeneration-associated changes in a subcellular compartment of neurons via image processing

Saravana K Kumarasamy, Yunshi Wang, Vignesh Viswanathan, Rachel S Kraut

Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach

Richard C McEachin, Benjamin J Keller, Erika FH Saunders, Melvin G McInnis

Fast Gene Ontology based clustering for microarray experiments

Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi

Filling the gap between biology and computer science

Jesús S Aguilar-Ruiz, Jason H Moore, Marylyn D Ritchie

Fast approximate hierarchical clustering using similarity heuristics

Meelis Kull, Jaak Vilo

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